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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11783038_11783649_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11783038 - 11783649
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATGCTTTCATA
Flanking Amino Acid:
EKHEVTGWVLISPLNKEDEG
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
87
27.7
Major BPS
100
1.24
0.5
100
0
Major PPT
83
0.74
0.7
77.4
31.3
Minor 5ss
40.4
-1.1
2.8
51.7
39.2
Minor BPS
49.2
-0
1.8
59.37
41.5

Associated Gene:

Gene:
IGFBP7
Ensembl Gene ID:
ENSAPLG00000024839
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036687
11781115 - 11796789
15675