Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11877422_11890892_R

Intron Information:

Intron Rank:

155206

Intron Class:

major

Intron Phase:

Intron Coordinates:

11877422 - 11890892

Intron Length:

13471

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTGTTCTG

5'SS Class:

major

3'SS Sequence:

TCCTTTGCTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTAAA

U12 Branch Point Sequence:

TTCTCCTTTGCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.2

0.29

1.3

57.6

46.7

Major BPS

70.2

0.5

71.6

30.1

Major PPT

69.7

0.44

1.1

70.9

33.7

Minor 5ss

32.9

-2

3.1

41.8

44.7

Minor BPS

47.7

-0.1

3.6

84.03

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030994

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033017

11876209 - 11891081

14873