Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11917673_11918316_R

Intron Information:

Intron Rank:

130372

Intron Class:

major

Intron Phase:

Intron Coordinates:

11917673 - 11918316

Intron Length:

644

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTGAGTACC

5'SS Class:

major

3'SS Sequence:

TTCTTGTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAAACAT

U12 Branch Point Sequence:

CTGACAGTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.5

0.53

69.6

34.4

Major BPS

54.4

0.11

61.4

34.3

Major PPT

89.5

0.89

0.7

87.9

29.5

Minor 5ss

34.1

-1.8

2.7

44.2

37.1

Minor BPS

42.7

-0.5

2.3

54.43

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017400

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040493

11915197 - 11918552

3356