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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11917673_11924404_R

Intron Information:

Intron Rank:
130368
Intron Class:
major
Intron Phase:
Intron Coordinates:
11917673 - 11924404
Intron Length:
6732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
CTGACAGTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
42.7
-0.5
2.3
54.43
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017400
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021860
11915197 - 11925102
9906