About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_11965814_11966381_F

Intron Information:

Intron Rank:
127187
Intron Class:
major
Intron Phase:
Intron Coordinates:
11965814 - 11966381
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
TTGTCTTCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGTT
U12 Branch Point Sequence:
TTGTCTTCAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
36.1
-0.8
4.3
65.3
43.7
Major PPT
77.7
0.62
0.9
74.6
34.9
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
57.9
0.24
1.8
71.46
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018582
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042829
11965679 - 11967618
1940