About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12143569_12158112_F

Intron Information:

Intron Rank:
142379
Intron Class:
major
Intron Phase:
Intron Coordinates:
12143569 - 12158112
Intron Length:
14544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
AAATGGCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
60.2
0.23
1
51.8
42.8
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
71.1
0.66
1.3
76.99
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026686
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035627
12143392 - 12167650
24259
ENSAPLT00000035427
12143392 - 12162121
18730