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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12143569_12161792_F

Intron Information:

Intron Rank:
142377
Intron Class:
major
Intron Phase:
Intron Coordinates:
12143569 - 12161792
Intron Length:
18224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ACTCTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
53.7
0.2
1.7
70.72
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026686
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021061
12143392 - 12167650
24259