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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12180426_12194516_F

Intron Information:

Intron Rank:
124386
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
12180426 - 12194516
Intron Length:
14091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TGGATTAAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TATGAGTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
57.8
0.18
1.1
52.3
45.1
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
49.6
0.05
2.3
73.87
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017069
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033178
12180284 - 12195677
15394