Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12187584_12190332_F

Intron Information:

Intron Rank:

124389

Intron Class:

major

Intron Phase:

Intron Coordinates:

12187584 - 12190332

Intron Length:

2749

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTGCCA

5'SS Class:

major

3'SS Sequence:

TTGTTTTGCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGCCTTTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.9

0.42

1.1

42.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

74.4

0.55

0.9

69.4

41.7

Minor 5ss

29.7

-2.3

3.4

39.7

45.8

Minor BPS

64.6

0.53

1.2

73.2

38.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017069

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043339

12179250 - 12190414

11165