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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12191064_12191729_R

Intron Information:

Intron Rank:
131369
Intron Class:
major
Intron Phase:
Intron Coordinates:
12191064 - 12191729
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATGC
5'SS Class:
major
3'SS Sequence:
TTCATTTTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATTTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68.8
37.2
Major BPS
100
1.24
0.5
100
0
Major PPT
79.5
0.66
0.9
73.7
40.4
Minor 5ss
38.4
-1.3
3
51.4
45.1
Minor BPS
56
0.18
1.6
66.81
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017884
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037917
12190802 - 12192548
1747