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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12227863_12229324_F

Intron Information:

Intron Rank:
135681
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
12227863 - 12229324
Intron Length:
1462

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
AAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTACGG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTCTATTTACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
47.7
-0.1
3.2
76.6
36.5
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
51
-0.1
2
66.09
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023023
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023853
12227532 - 12230090
2559