Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12238477_12246323_F

Intron Information:

Intron Rank:

131444

Intron Class:

major

Intron Phase:

Intron Coordinates:

12238477 - 12246323

Intron Length:

7847

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGCTGA

5'SS Class:

strong_major

3'SS Sequence:

ACATATCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

ATGTACATATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.1

37.5

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

73.5

0.53

0.9

66.2

39.6

Minor 5ss

37.8

-1.4

47.1

48.3

Minor BPS

0.01

72.64

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020598

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028191

12237507 - 12247101

9595