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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12257400_12264875_F

Intron Information:

Intron Rank:
127438
Intron Class:
major
Intron Phase:
Intron Coordinates:
12257400 - 12264875
Intron Length:
7476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATA
5'SS Class:
strong_major
3'SS Sequence:
AACTACCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTTTCCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
79.7
35.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
71.9
0.49
0.9
66.7
39.4
Minor 5ss
49
-0.1
2.5
65.8
45.4
Minor BPS
62
0.24
1.9
68.4
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018719
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035412
12256792 - 12265068
8277