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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12278143_12295979_F

Intron Information:

Intron Rank:
144991
Intron Class:
major
Intron Phase:
Intron Coordinates:
12278143 - 12295979
Intron Length:
17837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
GCTTCCCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
80.6
31.9
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
78.7
0.65
0.8
69.7
36.7
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
68.1
0.65
1.7
81.5
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028178
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030256
12277467 - 12296300
18834