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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12503340_12554929_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12503340 - 12554929
Intron Length:
51590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTAATCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCTGTGTTAATC
Flanking Amino Acid:
FTMLLTPLAHAFSRAPVPMA
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80.2
0.68
0.9
74
36.3
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
51
0.01
2.1
64.76
42

Associated Gene:

Gene:
ADGRL3
Ensembl Gene ID:
ENSAPLG00000002668
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028508
12411598 - 12814160
402563
ENSAPLT00000023663
12502576 - 12814160
311585
ENSAPLT00000019006
12411598 - 12813421
401824
ENSAPLT00000047643
12502576 - 12815137
312562