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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12555144_12609454_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12555144 - 12609454
Intron Length:
54311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGCAT
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTTTTCTGACT
Flanking Amino Acid:
LPDAYKIMTQRCSNRTQCAV
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
64.6
40.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
90.8
0.92
0.7
88.7
28.3
Minor 5ss
37.9
-1.4
3.4
55.3
48.9
Minor BPS
60.4
0.41
1.6
80.04
35.7

Associated Gene:

Gene:
ADGRL3
Ensembl Gene ID:
ENSAPLG00000002668
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019006
12411598 - 12813421
401824
ENSAPLT00000047643
12502576 - 12815137
312562
ENSAPLT00000028508
12411598 - 12814160
402563
ENSAPLT00000023663
12502576 - 12814160
311585