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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12716413_12718609_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12716413 - 12718609
Intron Length:
2197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TAATTCTGAACA
Flanking Amino Acid:
AKQPCPMGSIGVATFRCLAP
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
78
38.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
84.6
0.78
0.8
76.7
37.4
Minor 5ss
33.6
-1.9
2.9
41.7
44.7
Minor BPS
68.9
0.59
1.4
74.47
36.3

Associated Gene:

Gene:
ADGRL3
Ensembl Gene ID:
ENSAPLG00000002668
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023663
12502576 - 12814160
311585
ENSAPLT00000019006
12411598 - 12813421
401824
ENSAPLT00000002713
12632070 - 12814160
182091
ENSAPLT00000047643
12502576 - 12815137
312562
ENSAPLT00000028508
12411598 - 12814160
402563