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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12741948_12742759_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12741948 - 12742759
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGAAGC
5'SS Class:
major
3'SS Sequence:
CTTTTGCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTG
Flanking Amino Acid:
DIVRENTDNIQLEVARLSTD
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
61.1
43.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.9
0.65
0.9
73
36.5
Minor 5ss
35.7
-1.6
3
48.6
40.5
Minor BPS
68.9
0.45
1.6
74.56
38.3

Associated Gene:

Gene:
ADGRL3
Ensembl Gene ID:
ENSAPLG00000002668
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028508
12411598 - 12814160
402563
ENSAPLT00000023663
12502576 - 12814160
311585
ENSAPLT00000019006
12411598 - 12813421
401824
ENSAPLT00000002713
12632070 - 12814160
182091
ENSAPLT00000047643
12502576 - 12815137
312562