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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12745187_12745876_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12745187 - 12745876
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTACTGCATT
Flanking Amino Acid:
PVVFTVKHIKQSEENFNPNC
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
82.9
0.74
0.8
77
31.7
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
54.3
0.22
2.1
81.93
39.6

Associated Gene:

Gene:
ADGRL3
Ensembl Gene ID:
ENSAPLG00000002668
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028508
12411598 - 12814160
402563
ENSAPLT00000023663
12502576 - 12814160
311585
ENSAPLT00000019006
12411598 - 12813421
401824
ENSAPLT00000002713
12632070 - 12814160
182091
ENSAPLT00000047643
12502576 - 12815137
312562