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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12746054_12756913_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12746054 - 12756913
Intron Length:
10860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATCT
Flanking Amino Acid:
AVLMAHVEVKHSDAVHDLLL
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
81.8
38.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.1
0.75
0.8
74.5
40.4
Minor 5ss
43.9
-0.7
3.2
65.5
45.8
Minor BPS
64
0.52
1.7
82.72
39.3

Associated Gene:

Gene:
ADGRL3
Ensembl Gene ID:
ENSAPLG00000002668
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023663
12502576 - 12814160
311585
ENSAPLT00000019006
12411598 - 12813421
401824
ENSAPLT00000002713
12632070 - 12814160
182091
ENSAPLT00000047643
12502576 - 12815137
312562
ENSAPLT00000028508
12411598 - 12814160
402563