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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12757124_12758227_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12757124 - 12758227
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
AACTTGTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTCTTTTAAACT
Flanking Amino Acid:
LIGINRTDQPIACAVFAALL
Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
64.6
40.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.2
0.52
0.9
66
40
Minor 5ss
31.3
-2.1
3.4
42.6
44.5
Minor BPS
59.8
0.39
1.7
74.22
43.6

Associated Gene:

Gene:
ADGRL3
Ensembl Gene ID:
ENSAPLG00000002668
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019006
12411598 - 12813421
401824
ENSAPLT00000002713
12632070 - 12814160
182091
ENSAPLT00000047643
12502576 - 12815137
312562
ENSAPLT00000028508
12411598 - 12814160
402563
ENSAPLT00000023663
12502576 - 12814160
311585