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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12791351_12807630_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12791351 - 12807630
Intron Length:
16280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
CGGGCTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGTCTTTCTATC
Flanking Amino Acid:
DINSSASLNRGAMANHLITN
Intron Amino Acid Position:
1178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
61.3
0.25
1
50.1
43.9
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
45.3
-0.3
1.7
56.21
36.1

Associated Gene:

Gene:
ADGRL3
Ensembl Gene ID:
ENSAPLG00000002668
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028508
12411598 - 12814160
402563