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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12791351_12813360_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12791351 - 12813360
Intron Length:
22010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
TAATGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TCTTGTGTAATG
Flanking Amino Acid:
DINSSASLNREGLLNNARDT
Intron Amino Acid Position:
1040

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
80.4
0.68
0.9
77.3
41.3
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
46.6
-0.3
2.4
57.98
44.9

Associated Gene:

Gene:
ADGRL3
Ensembl Gene ID:
ENSAPLG00000002668
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047643
12502576 - 12815137
312562
ENSAPLT00000023663
12502576 - 12814160
311585
ENSAPLT00000002713
12632070 - 12814160
182091