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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12830886_12831879_F

Intron Information:

Intron Rank:
130891
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
12830886 - 12831879
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGGACAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TGCTTGTGGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
68
0.45
1
57.8
39
Major PPT
55.8
0.13
1.1
48.6
43.3
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
45.8
-0.3
2.2
59.05
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020301
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040997
12830721 - 12832699
1979
ENSAPLT00000023555
12830176 - 12832069
1894