About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12832104_12832301_F

Intron Information:

Intron Rank:
130893
Intron Class:
major
Intron Phase:
Intron Coordinates:
12832104 - 12832301
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
TCCCATCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGGAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
100
1.24
0.5
100
0
Major PPT
75.7
0.58
0.8
69.1
31.1
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
50.8
0.02
2.1
72.61
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020301
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040997
12830721 - 12832699
1979