Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12859593_12860573_F

Intron Information:

Intron Rank:

124151

Intron Class:

major

Intron Phase:

Intron Coordinates:

12859593 - 12860573

Intron Length:

981

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCAAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAAGGAC

U12 Branch Point Sequence:

TTTTTTTTTAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.8

83.1

30.9

Major BPS

43.4

-0.4

1.2

35.2

31.9

Major PPT

88.4

0.86

0.9

94.6

18.5

Minor 5ss

35.6

-1.6

47.8

47.9

Minor BPS

56.3

0.05

1.8

67.7

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016922

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020602

12859403 - 12868025

8623

ENSAPLT00000029777

12859403 - 12867120

7718