Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12882936_12885905_F

Intron Information:

Intron Rank:

124149

Intron Class:

major

Intron Phase:

Intron Coordinates:

12882936 - 12885905

Intron Length:

2970

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TAATCCTCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTAATCAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

74.5

41.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.59

0.9

66.7

Minor 5ss

-1.4

47.2

42.5

Minor BPS

58.7

0.27

78.53

37.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016922

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047906

12870088 - 12886173

16086

ENSAPLT00000024538

12867642 - 12889100

21459

ENSAPLT00000017284

12882103 - 12889100

6998