Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12886031_12888993_F

Intron Information:

Intron Rank:

124150

Intron Class:

major

Intron Phase:

Intron Coordinates:

12886031 - 12888993

Intron Length:

2963

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTGAGTGTC

5'SS Class:

major

3'SS Sequence:

GTGCTTATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTTAT

U12 Branch Point Sequence:

AAGTCCTTCAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.51

1.1

69.1

35.8

Major BPS

76.2

0.65

1.1

65.7

43.2

Major PPT

77.2

0.61

0.9

40.4

Minor 5ss

34.7

-1.7

3.4

53.4

43.8

Minor BPS

57.1

0.31

1.9

73.04

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016922

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024538

12867642 - 12889100

21459

ENSAPLT00000017284

12882103 - 12889100

6998