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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12931573_12933801_F

Intron Information:

Intron Rank:
134417
Intron Class:
major
Intron Phase:
Intron Coordinates:
12931573 - 12933801
Intron Length:
2229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTGAATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTATTCTGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
68.3
0.41
1.1
67.6
42.4
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
69.4
0.59
1.3
75.86
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022248
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025235
12930552 - 12934375
3824