About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12931573_12935241_F

Intron Information:

Intron Rank:
134416
Intron Class:
major
Intron Phase:
Intron Coordinates:
12931573 - 12935241
Intron Length:
3669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTCCTGAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.6
0.76
0.8
77.5
36.5
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
71.7
0.66
1.7
83.45
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022248
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022721
12930552 - 12935381
4830