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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_12931573_12943071_F

Intron Information:

Intron Rank:
134419
Intron Class:
major
Intron Phase:
Intron Coordinates:
12931573 - 12943071
Intron Length:
11499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTCAC
U12 Branch Point Sequence:
TGTCTCTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
67.1
0.43
1.2
69.3
37.7
Major PPT
74.8
0.56
0.9
74.7
34.8
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
59.7
0.3
1.6
69.16
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022248
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032977
12930552 - 12944904
14353