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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13067743_13067968_F

Intron Information:

Intron Rank:
134421
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
13067743 - 13067968
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
58
0.33
1.8
79.06
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022248
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037335
13060948 - 13068313
7366