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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13139094_13142370_F

Intron Information:

Intron Rank:
146476
Intron Class:
major
Intron Phase:
Intron Coordinates:
13139094 - 13142370
Intron Length:
3277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTCTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
79.1
37.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.9
0.76
0.8
80.8
29.8
Minor 5ss
44.3
-0.6
2.8
59.1
45.3
Minor BPS
84.7
1.09
1
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028929
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034719
13138663 - 13182770
44108