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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13139094_13182662_F

Intron Information:

Intron Rank:
146479
Intron Class:
major
Intron Phase:
Intron Coordinates:
13139094 - 13182662
Intron Length:
43569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTTACCTTTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
79.1
37.5
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
88.3
0.86
0.6
86
21
Minor 5ss
44.3
-0.6
2.8
59.1
45.3
Minor BPS
65.3
0.34
1.7
72.39
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028929
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045267
13138663 - 13200059
61397
ENSAPLT00000034948
13139077 - 13191068
51992