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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13164972_13175092_F

Intron Information:

Intron Rank:
146484
Intron Class:
major
Intron Phase:
Intron Coordinates:
13164972 - 13175092
Intron Length:
10121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAGCA
5'SS Class:
major
3'SS Sequence:
CTTTTGCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
AGGTCGTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
61.4
37.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.5
0.8
0.8
76.9
37.3
Minor 5ss
42.3
-0.8
3.2
57.2
47.1
Minor BPS
61
0.34
2.1
70.55
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028929
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044547
13164324 - 13182770
18447