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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13182035_13182662_F

Intron Information:

Intron Rank:
146483
Intron Class:
major
Intron Phase:
Intron Coordinates:
13182035 - 13182662
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAATACTC
5'SS Class:
major
3'SS Sequence:
TTTTCCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTTACCTTTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
64.5
39.8
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
88.3
0.86
0.6
86
21
Minor 5ss
36.7
-1.5
3.2
48.8
41.3
Minor BPS
65.3
0.34
1.7
72.39
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028929
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037252
13181301 - 13182770
1470