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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13184797_13190959_F

Intron Information:

Intron Rank:
146482
Intron Class:
major
Intron Phase:
Intron Coordinates:
13184797 - 13190959
Intron Length:
6163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTTTC
5'SS Class:
major
3'SS Sequence:
CCCTTCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCACATTAGAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
76
34.8
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
79.7
0.67
0.7
72.3
32.4
Minor 5ss
45.1
-0.5
3.1
60.9
38.3
Minor BPS
49
0.01
2
71.62
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028929
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034948
13139077 - 13191068
51992