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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13208153_13210890_F

Intron Information:

Intron Rank:
143112
Intron Class:
major
Intron Phase:
Intron Coordinates:
13208153 - 13210890
Intron Length:
2738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGAAAG
5'SS Class:
major
3'SS Sequence:
TTTTTGGTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGATTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
66
39.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.5
0.55
1
74.6
40
Minor 5ss
39.1
-1.2
2.8
45.5
43.8
Minor BPS
70.8
0.65
1.2
75.26
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027088
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034386
13208035 - 13254225
46191