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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13211044_13212228_F

Intron Information:

Intron Rank:
143113
Intron Class:
major
Intron Phase:
Intron Coordinates:
13211044 - 13212228
Intron Length:
1185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAG
U12 Branch Point Sequence:
CAGTGGTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
59
0.22
1.5
67.7
36.5
Major PPT
80.5
0.69
0.7
72.9
31.9
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
41.8
-0.5
2.4
57.31
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027088
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034386
13208035 - 13254225
46191