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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13260478_13273826_F

Intron Information:

Intron Rank:
138121
Intron Class:
major
Intron Phase:
Intron Coordinates:
13260478 - 13273826
Intron Length:
13349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGGCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ATTTTCTGACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
65.8
0.36
1
58.4
41.8
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
60.6
0.33
1.7
74.27
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024277
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036671
13258883 - 13274168
15286