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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13498912_13500566_F

Intron Information:

Intron Rank:
141873
Intron Class:
major
Intron Phase:
Intron Coordinates:
13498912 - 13500566
Intron Length:
1655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TGAAAAGTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
75.3
40.8
Major BPS
67.7
0.44
1
58
38.9
Major PPT
70.7
0.47
1
66.5
40
Minor 5ss
34.5
-1.8
2.8
42.1
44.5
Minor BPS
40.8
-0.7
2.2
52.33
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026372
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018371
13498808 - 13500772
1965