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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13498912_13528005_F

Intron Information:

Intron Rank:
141876
Intron Class:
major
Intron Phase:
Intron Coordinates:
13498912 - 13528005
Intron Length:
29094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCCCTCTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
75.3
40.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
76.5
0.6
0.9
70.6
34.8
Minor 5ss
34.5
-1.8
2.8
42.1
44.5
Minor BPS
48.7
-0
1.8
65.4
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026372
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032472
13409109 - 13528542
119434