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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13535625_13537960_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13535625 - 13537960
Intron Length:
2336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
SFTVMTQTLPGRQISPAVPG
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
90.6
0.91
0.7
88.8
26.8
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
TECRL
Ensembl Gene ID:
ENSAPLG00000004528
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034331
13534727 - 13593990
59264