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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13536380_13537960_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13536380 - 13537960
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTGATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACACGAT
U12 Branch Point Sequence:
TTTTTCTTGATA
Flanking Amino Acid:
SFTVMTQTLPVGIFAFLMVI
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
46.3
-0.2
1.3
40.5
39.5
Major PPT
82.1
0.72
0.9
80.6
31.5
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
80.4
0.95
0.9
85.58
26.2

Associated Gene:

Gene:
TECRL
Ensembl Gene ID:
ENSAPLG00000004528
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004666
13536252 - 13593990
57739