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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13543032_13544142_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13543032 - 13544142
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
TTCTATTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATCATTTCATT
Flanking Amino Acid:
YINHPRYTPPSFGHRQVSLA
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
81.8
31
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.8
0.76
0.8
77.1
36.9
Minor 5ss
47.8
-0.2
2.5
64
40.7
Minor BPS
49.3
0.03
1.9
71.44
39.7

Associated Gene:

Gene:
TECRL
Ensembl Gene ID:
ENSAPLG00000004528
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034331
13534727 - 13593990
59264
ENSAPLT00000033094
13537300 - 13593990
56691
ENSAPLT00000004666
13536252 - 13593990
57739