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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13544216_13545954_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13544216 - 13545954
Intron Length:
1739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTGTG
5'SS Class:
major
3'SS Sequence:
TTGTCCATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTGTCCATT
Flanking Amino Acid:
GHTPLKNMIKGCAFYWGFTS
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
72.2
39.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79.5
0.66
0.9
70.7
39.8
Minor 5ss
36.4
-1.5
3.3
48.7
47.5
Minor BPS
45.7
-0.2
2.5
75.15
42.4

Associated Gene:

Gene:
TECRL
Ensembl Gene ID:
ENSAPLG00000004528
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034331
13534727 - 13593990
59264
ENSAPLT00000033094
13537300 - 13593990
56691
ENSAPLT00000004666
13536252 - 13593990
57739