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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13559467_13560814_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13559467 - 13560814
Intron Length:
1348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTGTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTCCTTACAG
Flanking Amino Acid:
PSRVGLQLERNGPYLKDSVN
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
86.8
0.83
0.8
80.7
31.5
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
62.2
0.24
1.8
68.51
44.8

Associated Gene:

Gene:
TECRL
Ensembl Gene ID:
ENSAPLG00000004528
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034331
13534727 - 13593990
59264
ENSAPLT00000033094
13537300 - 13593990
56691
ENSAPLT00000004666
13536252 - 13593990
57739