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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_13580106_13593756_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13580106 - 13593756
Intron Length:
13651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GAGCAATTAATC
Flanking Amino Acid:
SKKQICIVDKVPPSSTLLDV
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
46.8
-0.2
1.7
52.57
38

Associated Gene:

Gene:
TECRL
Ensembl Gene ID:
ENSAPLG00000004528
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034331
13534727 - 13593990
59264
ENSAPLT00000033094
13537300 - 13593990
56691
ENSAPLT00000004666
13536252 - 13593990
57739