About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_1359033_1360550_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1359033 - 1360550
Intron Length:
1518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTGTCTTCATGC
Flanking Amino Acid:
IEWLPQNDLLGHPNIKAFLS
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
81.7
31.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.1
0.83
0.7
84.7
28.8
Minor 5ss
35.3
-1.7
2.9
46.6
41.8
Minor BPS
47.3
-0.2
2
61.95
44

Associated Gene:

Gene:
UGT8
Ensembl Gene ID:
ENSAPLG00000008294
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008618
1323598 - 1363942
40345