About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_1360771_1362348_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1360771 - 1362348
Intron Length:
1578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCACGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTTTCTTTCACG
Flanking Amino Acid:
EALVKVINDPSYRQRAQRLS
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.8
35.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80.6
0.69
0.8
77.3
30.3
Minor 5ss
38.6
-1.3
3.1
50.7
46.2
Minor BPS
65.6
0.35
1.8
71.8
41.3

Associated Gene:

Gene:
UGT8
Ensembl Gene ID:
ENSAPLG00000008294
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008618
1323598 - 1363942
40345